remove outdated commands: preflight, utils, self legacy group

preflight referenced non-existent work-order.md (replaced by agent-tasks.md).
utils only contained albany-cleanup (Albany supercomputer no longer used).
self was a legacy backward-compat group — update/uninstall are already top-level.

README.md

@@ -31,8 +31,6 @@ mytoolkit --help
 | `ssh` | `list` / `connect` / `tunnel` / `cmd` |
 | `git` | `proxy` (set/unset/list/status) |
 | `server` | Manage dev/serve servers |
-| `preflight` | Pre-flight checks for work-order execution |
-| `utils` | `albany-cleanup` |
 | `update` | Reinstall from local repo |
 | `uninstall` | Uninstall |
 

bin/cli.py

@@ -4,7 +4,7 @@ from pathlib import Path
 
 import click
 
-from bin.commands import pdf, image, latex, video, bib, utils
+from bin.commands import pdf, image, latex, video, bib
 from bin.commands.convert import convert_cmd
 from bin.commands.env import env_cmd
 from bin.commands.templates import templates_cmd
@@ -13,9 +13,7 @@ from bin.commands.git import git_cmd
 from bin.commands.server import server_cmd
 from bin.commands.webpage import webpage_cmd
 from bin.commands.mail import mail
-from bin.commands.preflight import preflight_cmd
+from bin.commands.self_mgmt import update_cmd, uninstall_cmd
-from bin.commands.self_mgmt import update_cmd, uninstall_cmd, self_cmd
-from bin.utils import handle_errors
 
 
 @click.group()
@@ -32,7 +30,6 @@ cli.add_command(image.image)
 cli.add_command(latex.latex)
 cli.add_command(video.video)
 cli.add_command(bib.bib)
-cli.add_command(utils.utils)
 cli.add_command(env_cmd)
 cli.add_command(templates_cmd)
 cli.add_command(ssh_cmd)
@@ -40,10 +37,8 @@ cli.add_command(git_cmd)
 cli.add_command(server_cmd)
 cli.add_command(webpage_cmd)
 cli.add_command(mail)
-cli.add_command(preflight_cmd)
 cli.add_command(update_cmd)
 cli.add_command(uninstall_cmd)
-cli.add_command(self_cmd)
 
 
 def main():

bin/commands/__init__.py

@@ -1,11 +1,11 @@
 """MyCLI subcommands."""
 
-from . import pdf, image, latex, video, bib, utils
+from . import pdf, image, latex, video, bib
 from .env import env_cmd
 from .ssh import ssh_cmd
 from .git import git_cmd
 from .server import server_cmd
 from .webpage import webpage_cmd
-from .self_mgmt import self_cmd, update_cmd, uninstall_cmd
+from .self_mgmt import update_cmd, uninstall_cmd
 
-__all__ = ["pdf", "image", "latex", "video", "bib", "utils", "env_cmd", "ssh_cmd", "git_cmd", "server_cmd", "webpage_cmd", "self_cmd", "update_cmd", "uninstall_cmd"]
+__all__ = ["pdf", "image", "latex", "video", "bib", "env_cmd", "ssh_cmd", "git_cmd", "server_cmd", "webpage_cmd", "update_cmd", "uninstall_cmd"]

bin/commands/preflight.py

@@ -1,119 +0,0 @@
-"""Pre-flight check for work-order consistency and system health."""
-
-import json
-import os
-import re
-import sys
-from pathlib import Path
-
-import click
-
-
-@click.command(name="preflight")
-def preflight_cmd():
-    """Run pre-flight checks before executing work orders."""
-    issues = []
-    warnings = []
-
-    click.secho("Running pre-flight checks...", fg="cyan")
-    click.echo("")
-
-    # === Check 1: work-order.md vs checkpoint JSON consistency ===
-    work_order = Path.home() / "workspace/assistant/work-order.md"
-
-    if work_order.exists():
-        content = work_order.read_text()
-
-        # Find progress numbers like "进度: X/Y 步骤"
-        progress_match = re.search(r"进度[:：]\s*(\d+)/(\d+)\s*步骤", content)
-        if progress_match:
-            wo_current = int(progress_match.group(1))
-            wo_total = int(progress_match.group(2))
-
-            # Find checkpoint files referenced in work-order
-            cp_match = re.search(r"进度档[:：]\s*(\S+)", content)
-            if cp_match:
-                cp_path = Path.home() / "workspace" / cp_match.group(1)
-                if cp_path.exists():
-                    try:
-                        cp = json.loads(cp_path.read_text())
-                        cp_current = cp.get("currentStep", 0)
-                        cp_total = cp.get("totalSteps", 0)
-                        cp_completed = len(cp.get("completedSteps", []))
-
-                        if wo_current != cp_current or wo_total != cp_total:
-                            issues.append(
-                                f"进度不一致: 工作单 {wo_current}/{wo_total} vs 进度档 {cp_current}/{cp_total}"
-                            )
-                        elif cp_current != cp_completed + 1 and cp_current <= cp_total:
-                            # currentStep should be next step to do (completed + 1)
-                            # unless all completed
-                            pass
-                    except json.JSONDecodeError:
-                        warnings.append(f"进度档 JSON 损坏: {cp_path}")
-
-        # Check for duplicate step numbers in step list
-        step_lines = re.findall(r"-\s*\[[x ]\]\s*\d+\.", content)
-        step_nums = []
-        for line in step_lines:
-            m = re.search(r"(\d+)\.", line)
-            if m:
-                step_nums.append(int(m.group(1)))
-
-        seen = set()
-        for num in step_nums:
-            if num in seen:
-                issues.append(f"步骤 {num} 在清单中重复出现")
-            seen.add(num)
-
-        # Check for gaps in step numbering
-        if step_nums:
-            expected = list(range(1, max(step_nums) + 1))
-            missing = [n for n in expected if n not in seen]
-            if missing:
-                warnings.append(f"步骤编号缺失: {missing}")
-    else:
-        warnings.append("工作单文件不存在")
-
-    # === Check 2: .zshrc PATH references ===
-    zshrc = Path.home() / ".zshrc"
-    if zshrc.exists():
-        zshrc_content = zshrc.read_text()
-        # Find paths in PATH exports (lines starting with export PATH=)
-        for line in zshrc_content.splitlines():
-            if not line.strip().startswith("export PATH="):
-                continue
-            refs = re.findall(r"/Users/\S+", line)
-            for ref in refs:
-                full_path = Path(ref).expanduser()
-                if not full_path.exists():
-                    issues.append(f".zshrc PATH 引用失效: {ref}")
-    else:
-        warnings.append(".zshrc 不存在")
-
-    # === Check 3: Workspace symlink health ===
-    workspace = Path.home() / "workspace"
-    if workspace.exists():
-        for item in workspace.iterdir():
-            if item.is_symlink():
-                if not item.exists():
-                    issues.append(f"符号链接失效: {item.name} -> {os.readlink(item)}")
-
-    # === Report ===
-    click.echo("-" * 50)
-    if issues:
-        click.secho(f"发现 {len(issues)} 个问题:", fg="red")
-        for issue in issues:
-            click.secho(f"  [x] {issue}", fg="red")
-    else:
-        click.secho("未发现严重问题", fg="green")
-
-    if warnings:
-        click.secho(f"\n{len(warnings)} 个警告:", fg="yellow")
-        for w in warnings:
-            click.secho(f"  [!] {w}", fg="yellow")
-
-    click.echo("-" * 50)
-
-    if issues:
-        sys.exit(1)

bin/commands/self_mgmt.py

@@ -107,12 +107,3 @@ def uninstall_cmd():
     click.secho("mytoolkit removed.", fg="green")
 
 
-# Backward compatibility: keep self_cmd group for any existing scripts
-@click.group(name="self")
-def self_cmd():
-    """Manage mytoolkit itself (legacy, use 'update'/'uninstall' directly)."""
-    pass
-
-
-self_cmd.add_command(update_cmd, name="update")
-self_cmd.add_command(uninstall_cmd, name="uninstall")

bin/commands/utils.py

@@ -1,32 +0,0 @@
-"""Utility commands."""
-
-from pathlib import Path
-
-import click
-
-from bin.utils import handle_errors
-
-
-@click.group()
-def utils():
-    """Miscellaneous utilities."""
-    pass
-
-
-@utils.command("albany-cleanup")
-@click.option("--dry-run", "-n", is_flag=True, help="Show what would be done")
-@handle_errors
-def albany_cleanup(dry_run):
-    """Clean up Albany temporary files (phalanx_*)."""
-    count = 0
-    for file in Path(".").glob("phalanx_*"):
-        if dry_run:
-            click.echo(f"Would remove: {file}")
-        else:
-            file.unlink()
-            count += 1
-
-    if dry_run:
-        click.echo("Dry run completed")
-    else:
-        click.echo(f"Removed {count} Albany temporary files")